Dylan Storey

Recovering academic, hacker, tinkerer, scientist.

Pal2Nal Bug

I found a bug in Pal2Nal..

The codon table(s?) in the Pal2Nal perl script appear to be incomplete. So far I’ve found that

ATW && ATM both fail to match Isoluecine , and YTR fails to match Luecine.

replace the following lines

1245 with “L” => “((C(U T).) ((U T)(U T)(A G R)) YTR)”,
1253 with “I” => “(A(U T)(U T C Y A W M))”,

I haven’t had time to check for other mistakes but I think this may be all.

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