I found a bug in Pal2Nal..
The codon table(s?) in the Pal2Nal perl script appear to be incomplete. So far I’ve found that
ATW && ATM both fail to match Isoluecine , and YTR fails to match Luecine.
replace the following lines
|1245 with “L” => “((C(U||T).)||((U||T)(U||T)(A||G||R))||YTR)”,|
|1253 with “I” => “(A(U||T)(U||T||C||Y||A||W||M))”,|
I haven’t had time to check for other mistakes but I think this may be all.blog comments powered by Disqus